CN09_01145 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

CN09_01145

Derived by automated computational analysis using gene prediction method- GeneMarkS+ (86 aa)

Predicted Functional Partners:

CN09_20300

0.867

CN09_12570

0.864

CN09_20305

0.849

CN09_01150

0.723

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

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© STRING Consortium 2020

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node1	node2	node1 annotation	node2 annotation	score
CN09_01145	CN09_01150	Derived by automated computational analysis using gene prediction method- GeneMarkS+	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.723
CN09_01145	CN09_12570	Derived by automated computational analysis using gene prediction method- GeneMarkS+	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.864
CN09_01145	CN09_20300	Derived by automated computational analysis using gene prediction method- GeneMarkS+	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.867
CN09_01145	CN09_20305	Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.849
CN09_01150	CN09_01145	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.723
CN09_01150	CN09_12570	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.836
CN09_01150	CN09_20300	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.837
CN09_12570	CN09_01145	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.864
CN09_12570	CN09_01150	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.836
CN09_12570	CN09_20305	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.831
CN09_20300	CN09_01145	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.867
CN09_20300	CN09_01150	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.837
CN09_20300	CN09_20305	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.926
CN09_20305	CN09_01145	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.849
CN09_20305	CN09_12570	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.831
CN09_20305	CN09_20300	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.926