STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01170Ribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology (527 aa)    
Predicted Functional Partners:
CN09_01160
Belongs to the mannitol dehydrogenase family
     
 0.903
CN09_20120
DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.897
CN09_26870
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.885
CN09_01165
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.871
CN09_23490
Tagatose-bisphosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology
      
 0.569
xylB
Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.545
CN09_32790
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.495
CN09_23485
Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.481
tal
Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
     
 0.468
CN09_32020
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.438
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (10%) [HD]