STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01320Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology (323 aa)    
Predicted Functional Partners:
CN09_01315
Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.998
CN09_01325
Polyamine abc transporter atp-binding protein; Belongs to the ABC transporter superfamily
 
 0.980
CN09_01330
Spermidine/putrescine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.980
CN09_15830
Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.932
CN09_01310
Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family
 
    0.929
CN09_20695
Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.921
CN09_00600
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.881
CN09_30850
Polyamine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.878
CN09_01065
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.872
kdpA
Potassium-transporting atpase subunit a; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
    
  0.853
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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