CN09_01320 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_01320

Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology (323 aa)

Predicted Functional Partners:

CN09_01315

0.995

CN09_01330

0.979

CN09_01325

0.973

CN09_01310

0.927

CN09_15830

0.805

CN09_01335

0.778

CN09_20695

0.756

CN09_20700

0.696

CN09_01050

0.690

CN09_00600

0.677

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_00600	CN09_01050	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Putrescine/spermidine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.796
CN09_00600	CN09_01320	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.677
CN09_00600	CN09_01325	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Polyamine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	0.681
CN09_00600	CN09_20700	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.767
CN09_01050	CN09_00600	Putrescine/spermidine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.796
CN09_01050	CN09_01315	Putrescine/spermidine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.665
CN09_01050	CN09_01320	Putrescine/spermidine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.690
CN09_01050	CN09_01325	Putrescine/spermidine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Polyamine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	0.513
CN09_01050	CN09_15830	Putrescine/spermidine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.838
CN09_01050	CN09_20695	Putrescine/spermidine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.809
CN09_01310	CN09_01315	Gamma-aminobutyraldehyde dehydrogenase; Catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.934
CN09_01310	CN09_01320	Gamma-aminobutyraldehyde dehydrogenase; Catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.927
CN09_01310	CN09_01325	Gamma-aminobutyraldehyde dehydrogenase; Catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family	Polyamine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	0.891
CN09_01310	CN09_01330	Gamma-aminobutyraldehyde dehydrogenase; Catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family	Spermidine/putrescine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.833
CN09_01310	CN09_01335	Gamma-aminobutyraldehyde dehydrogenase; Catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.595
CN09_01315	CN09_01050	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Putrescine/spermidine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.665
CN09_01315	CN09_01310	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Gamma-aminobutyraldehyde dehydrogenase; Catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family	0.934
CN09_01315	CN09_01320	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.995
CN09_01315	CN09_01325	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Polyamine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	0.973
CN09_01315	CN09_01330	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.988