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CN09_01325 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_01325" - Polyamine ABC transporter ATP-binding protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
CN09_01325Polyamine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (328 aa)    
Predicted Functional Partners:
CN09_01315
Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (271 aa)
 
  0.973
CN09_01320
Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (323 aa)
 
 
  0.973
CN09_01330
Spermidine/putrescine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (386 aa)
 
   
  0.895
CN09_01310
Gamma-aminobutyraldehyde dehydrogenase; Catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the aldehyde dehydrogenase family (475 aa)
 
     
  0.891
CN09_20695
Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (273 aa)
 
 
  0.721
CN09_18870
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (593 aa)
 
 
  0.718
CN09_20690
Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
 
  0.708
CN09_31485
Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (263 aa)
 
  0.688
CN09_15825
Putrescine/spermidine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (303 aa)
 
  0.681
CN09_00600
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)
 
 
  0.681
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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