CN09_01390 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_01390

AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)

Predicted Functional Partners:

CN09_06545

0.925

CN09_14830

0.924

CN09_33540

0.897

eno

0.882

msrA

0.850

lepA

0.836

CN09_03985

0.806

CN09_16455

0.798

CN09_34320

0.766

CN09_17505

0.761

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01390	CN09_03985	CN09_01390	CN09_03985	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Anthranilate synthase; trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Derived by automated computational analysis using gene prediction method- Protein Homology	0.806
CN09_01390	CN09_06545	CN09_01390	CN09_06545	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.925
CN09_01390	CN09_14830	CN09_01390	CN09_14830	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.924
CN09_01390	CN09_16455	CN09_01390	CN09_16455	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Radical SAM protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.798
CN09_01390	CN09_17505	CN09_01390	CN09_17505	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Dioxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.761
CN09_01390	CN09_33540	CN09_01390	CN09_33540	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.897
CN09_01390	CN09_34320	CN09_01390	CN09_34320	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.766
CN09_01390	eno	CN09_01390	CN09_07835	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Enolase; Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family	0.882
CN09_01390	lepA	CN09_01390	CN09_13750	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Elongation factor 4; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner	0.836
CN09_01390	msrA	CN09_01390	CN09_12515	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine	0.850
CN09_03985	CN09_01390	CN09_03985	CN09_01390	Anthranilate synthase; trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Derived by automated computational analysis using gene prediction method- Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.806
CN09_03985	CN09_34320	CN09_03985	CN09_34320	Anthranilate synthase; trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Derived by automated computational analysis using gene prediction method- Protein Homology	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.415
CN09_03985	eno	CN09_03985	CN09_07835	Anthranilate synthase; trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Derived by automated computational analysis using gene prediction method- Protein Homology	Enolase; Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family	0.986
CN09_03985	msrA	CN09_03985	CN09_12515	Anthranilate synthase; trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine	0.852
CN09_06545	CN09_01390	CN09_06545	CN09_01390	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.925
CN09_06545	CN09_34320	CN09_06545	CN09_34320	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.492
CN09_14830	CN09_01390	CN09_14830	CN09_01390	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.924
CN09_14830	CN09_34320	CN09_14830	CN09_34320	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.424
CN09_16455	CN09_01390	CN09_16455	CN09_01390	Radical SAM protein; Derived by automated computational analysis using gene prediction method- Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.798
CN09_17505	CN09_01390	CN09_17505	CN09_01390	Dioxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.761

page 1 of 2

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About