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CN09_01400 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_01400" - Derived by automated computational analysis using gene prediction method: Protein Homology in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01400Derived by automated computational analysis using gene prediction method- Protein Homology (406 aa)    
Predicted Functional Partners:
CN09_01405
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the major facilitator superfamily (535 aa)
 
   
  0.968
CN09_31765
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the major facilitator superfamily (539 aa)
 
 
  0.843
CN09_01395
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (226 aa)
 
     
  0.798
CN09_07270
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the major facilitator superfamily (514 aa)
 
 
  0.797
CN09_24930
RND transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (502 aa)
 
 
 
  0.588
CN09_10775
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (526 aa)
   
  0.554
macB
Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides (651 aa)
         
  0.547
CN09_34005
Nodulation protein NodT; Derived by automated computational analysis using gene prediction method- Protein Homology (484 aa)
 
 
 
  0.542
CN09_02750
RND transporter MFP subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (394 aa)
 
 
 
  0.513
CN09_01410
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (341 aa)
              0.506
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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