STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01535Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology (461 aa)    
Predicted Functional Partners:
CN09_16300
Potassium transporter trka; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
     
 0.999
CN09_01540
Phospholipase c; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.974
CN09_03385
Sterol desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.675
virG
Regulatory protein virg; VirG is required for the positive regulation of at least two vir loci encoded by the Ri plasmid of A.rhizogenes
     
 0.647
CN09_04090
dTDP-glucose 4,6-dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.644
CN09_14090
Thiol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.644
CN09_17280
Phenol degradation protein meta; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.644
CN09_34345
Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.632
CN09_14095
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.608
CN09_11840
Cytochrome c-type biogenesis protein; required for the transfer of heme to apocytochrome c; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.580
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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