STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01625GlcNAc transferase; Derived by automated computational analysis using gene prediction method: Protein Homology (291 aa)    
Predicted Functional Partners:
CN09_01630
30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family
       0.865
CN09_15575
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.805
CN09_22475
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.765
CN09_01620
D-amino acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.592
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
 0.580
CN09_06510
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
 0.570
CN09_15855
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.560
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity
 
 
 0.498
hisZ
ATP phosphoribosyltransferase regulatory subunit; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
 
     0.492
CN09_15655
Flagellar biosynthesis regulator FlhF; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.471
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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