CN09_01625 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_01625

GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (291 aa)

Predicted Functional Partners:

CN09_01630

0.865

CN09_15575

0.805

CN09_22475

0.765

CN09_01620

0.592

CN09_15290

0.580

CN09_06510

0.570

CN09_15855

0.560

htpG

0.498

hisZ

0.492

CN09_15655

0.471

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01620	CN09_01625	CN09_01620	CN09_01625	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.592
CN09_01625	CN09_01620	CN09_01625	CN09_01620	GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.592
CN09_01625	CN09_01630	CN09_01625	CN09_01630	GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bS21 family	0.865
CN09_01625	CN09_06510	CN09_01625	CN09_06510	GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.570
CN09_01625	CN09_15290	CN09_01625	CN09_15290	GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.580
CN09_01625	CN09_15575	CN09_01625	CN09_15575	GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.805
CN09_01625	CN09_15655	CN09_01625	CN09_15655	GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Flagellar biosynthesis regulator FlhF; Derived by automated computational analysis using gene prediction method- Protein Homology	0.471
CN09_01625	CN09_15855	CN09_01625	CN09_15855	GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.560
CN09_01625	CN09_22475	CN09_01625	CN09_22475	GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.765
CN09_01625	hisZ	CN09_01625	CN09_16185	GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	ATP phosphoribosyltransferase regulatory subunit; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine	0.492
CN09_01625	htpG	CN09_01625	CN09_32535	GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Chaperone protein HtpG; Molecular chaperone. Has ATPase activity	0.498
CN09_01630	CN09_01625	CN09_01630	CN09_01625	30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bS21 family	GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.865
CN09_06510	CN09_01625	CN09_06510	CN09_01625	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.570
CN09_06510	CN09_15290	CN09_06510	CN09_15290	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.902
CN09_06510	CN09_15855	CN09_06510	CN09_15855	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.784
CN09_15290	CN09_01625	CN09_15290	CN09_01625	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.580
CN09_15290	CN09_06510	CN09_15290	CN09_06510	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.902
CN09_15290	CN09_15855	CN09_15290	CN09_15855	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.677
CN09_15290	CN09_22475	CN09_15290	CN09_22475	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.914
CN09_15290	hisZ	CN09_15290	CN09_16185	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	ATP phosphoribosyltransferase regulatory subunit; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine	0.414

page 1 of 2

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About