CN09_01715 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_01715

IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)

Predicted Functional Partners:

CN09_01710

0.999

CN09_16960

0.999

CN09_03615

0.981

CN09_03620

0.971

CN09_01705

0.964

aspS

0.923

CN09_27040

0.909

CN09_26805

0.881

CN09_07855

0.862

gatB

0.848

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01705	CN09_01710	CN09_01705	CN09_01710	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.991
CN09_01705	CN09_01715	CN09_01705	CN09_01715	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.964
CN09_01705	CN09_03615	CN09_01705	CN09_03615	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.909
CN09_01705	CN09_03620	CN09_01705	CN09_03620	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.915
CN09_01705	CN09_16960	CN09_01705	CN09_16960	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.793
CN09_01705	CN09_27040	CN09_01705	CN09_27040	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.505
CN09_01710	CN09_01705	CN09_01710	CN09_01705	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.991
CN09_01710	CN09_01715	CN09_01710	CN09_01715	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_01710	CN09_03615	CN09_01710	CN09_03615	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.931
CN09_01710	CN09_03620	CN09_01710	CN09_03620	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.741
CN09_01710	CN09_07855	CN09_01710	CN09_07855	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.914
CN09_01710	CN09_16960	CN09_01710	CN09_16960	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.989
CN09_01710	CN09_26805	CN09_01710	CN09_26805	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	3-keto-5-aminohexanoate cleavage protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.829
CN09_01710	CN09_27040	CN09_01710	CN09_27040	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.938
CN09_01710	aspS	CN09_01710	CN09_10460	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps- L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily	0.702
CN09_01715	CN09_01705	CN09_01715	CN09_01705	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.964
CN09_01715	CN09_01710	CN09_01715	CN09_01710	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_01715	CN09_03615	CN09_01715	CN09_03615	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.981
CN09_01715	CN09_03620	CN09_01715	CN09_03620	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.971
CN09_01715	CN09_07855	CN09_01715	CN09_07855	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.862

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About