STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01760N-formylglutamate amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology (294 aa)    
Predicted Functional Partners:
hutI
Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.932
CN09_01755
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.836
CN09_28965
N-formimino-L-glutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.774
rpmJ
50S ribosomal protein L36; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL36 family
 
     0.760
CN09_28945
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.652
CN09_20025
UPF0262 protein CN09_20025; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0262 family
  
     0.625
CN09_27250
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.602
CN09_29405
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.559
CN09_06270
Glutathione reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
       0.541
CN09_15630
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.524
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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