CN09_01840 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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white nodes:
second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_01840

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (403 aa)

Predicted Functional Partners:

CN09_01845

0.940

CN09_04930

0.813

CN09_34170

0.813

CN09_11890

0.764

CN09_11895

0.759

CN09_15220

0.727

CN09_07505

0.724

CN09_10910

0.713

CN09_08345

0.698

CN09_14700

0.694

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

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node1	node2	node1 annotation	node2 annotation	score
CN09_01840	CN09_01845	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.940
CN09_01840	CN09_04930	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.813
CN09_01840	CN09_07505	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.724
CN09_01840	CN09_08345	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Exopolysaccharide production negative regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.698
CN09_01840	CN09_10910	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.713
CN09_01840	CN09_11890	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.764
CN09_01840	CN09_11895	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.759
CN09_01840	CN09_14700	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.694
CN09_01840	CN09_15220	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.727
CN09_01840	CN09_34170	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.813
CN09_01845	CN09_01840	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.940
CN09_04930	CN09_01840	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.813
CN09_07505	CN09_01840	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.724
CN09_07505	CN09_08345	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Exopolysaccharide production negative regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.735
CN09_07505	CN09_10910	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.682
CN09_07505	CN09_11890	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.761
CN09_07505	CN09_11895	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.767
CN09_07505	CN09_14700	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.761
CN09_07505	CN09_15220	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.759
CN09_08345	CN09_01840	Exopolysaccharide production negative regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.698