STRINGSTRING
CN09_01900 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_01900" - Homospermidine synthase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01900Homospermidine synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (483 aa)    
Predicted Functional Partners:
CN09_01525
Ornithine decarboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the Orn/Lys/Arg decarboxylase class-II family (377 aa)
 
     
  0.792
CN09_01905
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
              0.741
CN09_10415
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (152 aa)
   
          0.669
CN09_01895
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (128 aa)
              0.653
CN09_01925
Oligoendopeptidase F; Derived by automated computational analysis using gene prediction method- Protein Homology (618 aa)
 
          0.653
CN09_00025
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (346 aa)
              0.614
CN09_14535
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (110 aa)
   
          0.567
CN09_07930
ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (275 aa)
   
          0.560
CN09_10935
Protein tyrosine phosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (177 aa)
   
          0.558
CN09_14700
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (86 aa)
   
          0.541
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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