CN09_01905 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

CN09_01905

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)

Predicted Functional Partners:

CN09_01915

0.792

CN09_01920

0.791

CN09_01900

0.741

CN09_01925

0.720

CN09_01910

0.676

CN09_17285

0.500

CN09_00040

0.499

CN09_04045

0.473

CN09_16670

0.465

CN09_25420

0.445

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

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node1	node2	node1 annotation	node2 annotation	score
CN09_00040	CN09_01905	Aminomethyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.499
CN09_01900	CN09_01905	Homospermidine synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.741
CN09_01900	CN09_01910	Homospermidine synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	GTP cyclohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.452
CN09_01900	CN09_01915	Homospermidine synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.529
CN09_01900	CN09_01920	Homospermidine synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Aminodeoxychorismate synthase; Catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; Derived by automated computational analysis using gene prediction method- Protein Homology	0.518
CN09_01900	CN09_01925	Homospermidine synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Oligoendopeptidase F; Derived by automated computational analysis using gene prediction method- Protein Homology	0.653
CN09_01905	CN09_00040	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Aminomethyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	0.499
CN09_01905	CN09_01900	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Homospermidine synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.741
CN09_01905	CN09_01910	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	GTP cyclohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.676
CN09_01905	CN09_01915	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.792
CN09_01905	CN09_01920	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Aminodeoxychorismate synthase; Catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; Derived by automated computational analysis using gene prediction method- Protein Homology	0.791
CN09_01905	CN09_01925	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Oligoendopeptidase F; Derived by automated computational analysis using gene prediction method- Protein Homology	0.720
CN09_01905	CN09_04045	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.473
CN09_01905	CN09_16670	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Lysozyme; Derived by automated computational analysis using gene prediction method- Protein Homology	0.465
CN09_01905	CN09_17285	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.500
CN09_01905	CN09_25420	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.445
CN09_01910	CN09_01900	GTP cyclohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Homospermidine synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.452
CN09_01910	CN09_01905	GTP cyclohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.676
CN09_01910	CN09_01915	GTP cyclohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.851
CN09_01910	CN09_01920	GTP cyclohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Aminodeoxychorismate synthase; Catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; Derived by automated computational analysis using gene prediction method- Protein Homology	0.873