STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_01930Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (527 aa)    
Predicted Functional Partners:
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.815
CN09_14500
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
 
   
 0.805
CN09_01925
Oligoendopeptidase F; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.757
ispDF
Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)
     
 0.727
CN09_26870
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.677
CN09_15420
Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.663
CN09_07755
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.584
CN09_01920
Aminodeoxychorismate synthase; Catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.547
CN09_19725
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.543
CN09_01935
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.525
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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