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CN09_02095 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_02095" - Hydrolase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_02095Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)    
Predicted Functional Partners:
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
   
   
  0.849
CN09_02100
RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (194 aa)
         
  0.577
CN09_22405
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (346 aa)
 
          0.563
CN09_02105
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (215 aa)
              0.551
CN09_32590
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (277 aa)
 
     
  0.546
CN09_06430
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
 
          0.532
CN09_14930
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (282 aa)
 
 
  0.519
CN09_19735
Chloroperoxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)
 
     
  0.506
CN09_02680
3-ketoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (246 aa)
 
 
  0.486
CN09_14800
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (280 aa)
 
          0.468
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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