CN09_02150 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_02150

Cag pathogenicity island protein Cag4; Derived by automated computational analysis using gene prediction method- Protein Homology (122 aa)

Predicted Functional Partners:

CN09_30620

0.626

CN09_16910

0.621

CN09_30615

0.610

CN09_30495

0.592

CN09_22140

0.590

CN09_25430

0.585

CN09_20340

0.581

CN09_05765

0.576

CN09_25910

0.573

CN09_02155

0.561

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 5

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_02150	CN09_02155	Cag pathogenicity island protein Cag4; Derived by automated computational analysis using gene prediction method- Protein Homology	Regulator of CtrA degradation; Derived by automated computational analysis using gene prediction method- Protein Homology	0.561
CN09_02150	CN09_05765	Cag pathogenicity island protein Cag4; Derived by automated computational analysis using gene prediction method- Protein Homology	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.576
CN09_02150	CN09_16910	Cag pathogenicity island protein Cag4; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.621
CN09_02150	CN09_20340	Cag pathogenicity island protein Cag4; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.581
CN09_02150	CN09_22140	Cag pathogenicity island protein Cag4; Derived by automated computational analysis using gene prediction method- Protein Homology	ATP-dependent Clp protease proteolytic subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S14 family	0.590
CN09_02150	CN09_25430	Cag pathogenicity island protein Cag4; Derived by automated computational analysis using gene prediction method- Protein Homology	Acetone carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.585
CN09_02150	CN09_25910	Cag pathogenicity island protein Cag4; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase M48; Derived by automated computational analysis using gene prediction method- Protein Homology	0.573
CN09_02150	CN09_30495	Cag pathogenicity island protein Cag4; Derived by automated computational analysis using gene prediction method- Protein Homology	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.592
CN09_02150	CN09_30615	Cag pathogenicity island protein Cag4; Derived by automated computational analysis using gene prediction method- Protein Homology	Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.610
CN09_02150	CN09_30620	Cag pathogenicity island protein Cag4; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.626
CN09_02155	CN09_02150	Regulator of CtrA degradation; Derived by automated computational analysis using gene prediction method- Protein Homology	Cag pathogenicity island protein Cag4; Derived by automated computational analysis using gene prediction method- Protein Homology	0.561
CN09_05765	CN09_02150	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Cag pathogenicity island protein Cag4; Derived by automated computational analysis using gene prediction method- Protein Homology	0.576
CN09_05765	CN09_16910	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.786
CN09_05765	CN09_20340	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.773
CN09_05765	CN09_22140	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ATP-dependent Clp protease proteolytic subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S14 family	0.778
CN09_05765	CN09_25430	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Acetone carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.759
CN09_05765	CN09_25910	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase M48; Derived by automated computational analysis using gene prediction method- Protein Homology	0.774
CN09_05765	CN09_30495	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.802
CN09_05765	CN09_30615	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.771
CN09_05765	CN09_30620	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.766