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CN09_02160 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_02160" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_02160Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (63 aa)    
Predicted Functional Partners:
CN09_02165
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (424 aa)
              0.841
CN09_02155
Regulator of CtrA degradation; Derived by automated computational analysis using gene prediction method- Protein Homology (170 aa)
 
          0.771
CN09_17775
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (234 aa)
              0.744
CN09_12390
NAD(P)H-quinone oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (332 aa)
              0.744
clpA
Clp protease ClpX; ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ClpA/ClpB family (841 aa)
              0.744
CN09_27595
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (338 aa)
   
          0.689
CN09_27440
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (67 aa)
   
          0.675
CN09_07055
Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology (209 aa)
   
          0.644
CN09_05415
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (681 aa)
   
          0.601
CN09_10235
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (420 aa)
   
          0.582
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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