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CN09_02230 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_02230" - MarR family transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_02230MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (147 aa)    
Predicted Functional Partners:
CN09_02225
Chloride channel protein; Derived by automated computational analysis using gene prediction method- Protein Homology (599 aa)
 
     
  0.932
CN09_08750
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (690 aa)
 
 
 
  0.546
CN09_08745
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (69 aa)
 
          0.518
CN09_05800
Chloride channel protein; Derived by automated computational analysis using gene prediction method- Protein Homology (598 aa)
 
          0.470
CN09_12440
Chloride channel protein; Derived by automated computational analysis using gene prediction method- Protein Homology (453 aa)
 
          0.463
CN09_02245
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (286 aa)
 
 
 
  0.411
CN09_08740
Secretion protein HlyD; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (296 aa)
 
 
 
  0.405
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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