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CN09_02250 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_02250" - NAD-dependent epimerase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_02250NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)    
Predicted Functional Partners:
CN09_07555
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (498 aa)
          0.773
trmFO
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO; Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily (483 aa)
              0.714
CN09_02255
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (107 aa)
              0.619
CN09_02260
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (160 aa)
 
          0.544
CN09_05765
Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (614 aa)
 
 
  0.438
cpsB
Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family (475 aa)
   
   
  0.433
CN09_02805
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (513 aa)
 
 
  0.425
CN09_24905
Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (347 aa)
 
     
  0.421
CN09_24520
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (679 aa)
   
 
  0.416
CN09_00630
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (82 aa)
 
   
  0.412
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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