CN09_02255 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_02255

ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (107 aa)

Predicted Functional Partners:

CN09_02260

0.911

CN09_02910

0.783

CN09_02250

0.619

CN09_02080

0.559

CN09_32700

0.450

CN09_16870

0.410

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Fusion

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_02080	CN09_02255	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.559
CN09_02080	CN09_16870	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.431
CN09_02080	CN09_32700	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.773
CN09_02250	CN09_02255	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.619
CN09_02250	CN09_02260	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.544
CN09_02255	CN09_02080	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.559
CN09_02255	CN09_02250	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.619
CN09_02255	CN09_02260	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.911
CN09_02255	CN09_02910	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	UDP-glucuronate 5-epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.783
CN09_02255	CN09_16870	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.410
CN09_02255	CN09_32700	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.450
CN09_02260	CN09_02250	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.544
CN09_02260	CN09_02255	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.911
CN09_02910	CN09_02255	UDP-glucuronate 5-epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.783
CN09_16870	CN09_02080	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.431
CN09_16870	CN09_02255	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.410
CN09_16870	CN09_32700	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.493
CN09_32700	CN09_02080	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.773
CN09_32700	CN09_02255	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.450
CN09_32700	CN09_16870	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.493