STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_02285Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology (274 aa)    
Predicted Functional Partners:
pheT
Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
   
   0.999
secF
Preprotein translocase subunit secd/secf; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
       0.984
secD
Preprotein translocase subunit secd/secf; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
       0.984
CN09_02280
Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
       0.956
polA
In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
     
 0.950
CN09_06175
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.886
CN09_02295
Probable transcriptional regulatory protein CN09_02295; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.852
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.822
CN09_29335
Rnd transporter; Efflux pump membrane transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.820
CN09_29340
Hemolysin secretion protein d; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
       0.820
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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