CN09_02310 protein (Agrobacterium rhizogenes)

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Score

CN09_02310

Holliday junction resolvase; Derived by automated computational analysis using gene prediction method- Protein Homology (83 aa)

Predicted Functional Partners:

CN09_18560

0.984

CN09_02315

0.863

ruvA

0.856

ruvC

0.697

ruvB

0.592

CN09_02330

0.583

CN09_02335

0.543

CN09_02340

0.503

CN09_02300

0.441

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_02300	CN09_02310	CN09_02300	CN09_02310	Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Holliday junction resolvase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.441
CN09_02300	CN09_02315	CN09_02300	CN09_02315	Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.452
CN09_02300	ruvA	CN09_02300	CN09_02320	Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB	0.482
CN09_02300	ruvC	CN09_02300	CN09_02305	Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5’-terminal phosphate and a 3’-terminal hydroxyl group	0.598
CN09_02310	CN09_02300	CN09_02310	CN09_02300	Holliday junction resolvase; Derived by automated computational analysis using gene prediction method- Protein Homology	Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.441
CN09_02310	CN09_02315	CN09_02310	CN09_02315	Holliday junction resolvase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.863
CN09_02310	CN09_02330	CN09_02310	CN09_02330	Holliday junction resolvase; Derived by automated computational analysis using gene prediction method- Protein Homology	Metallophosphoesterase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.583
CN09_02310	CN09_02335	CN09_02310	CN09_02335	Holliday junction resolvase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the Nudix hydrolase family	0.543
CN09_02310	CN09_02340	CN09_02310	CN09_02340	Holliday junction resolvase; Derived by automated computational analysis using gene prediction method- Protein Homology	Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method- Protein Homology	0.503
CN09_02310	CN09_18560	CN09_02310	CN09_18560	Holliday junction resolvase; Derived by automated computational analysis using gene prediction method- Protein Homology	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.984
CN09_02310	ruvA	CN09_02310	CN09_02320	Holliday junction resolvase; Derived by automated computational analysis using gene prediction method- Protein Homology	Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB	0.856
CN09_02310	ruvB	CN09_02310	CN09_02325	Holliday junction resolvase; Derived by automated computational analysis using gene prediction method- Protein Homology	Holliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing	0.592
CN09_02310	ruvC	CN09_02310	CN09_02305	Holliday junction resolvase; Derived by automated computational analysis using gene prediction method- Protein Homology	Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5’-terminal phosphate and a 3’-terminal hydroxyl group	0.697
CN09_02315	CN09_02300	CN09_02315	CN09_02300	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.452
CN09_02315	CN09_02310	CN09_02315	CN09_02310	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Holliday junction resolvase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.863
CN09_02315	CN09_02330	CN09_02315	CN09_02330	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Metallophosphoesterase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.544
CN09_02315	CN09_02335	CN09_02315	CN09_02335	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the Nudix hydrolase family	0.543
CN09_02315	CN09_02340	CN09_02315	CN09_02340	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method- Protein Homology	0.503
CN09_02315	CN09_18560	CN09_02315	CN09_18560	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.426
CN09_02315	ruvA	CN09_02315	CN09_02320	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB	0.847

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