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CN09_02315 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_02315" - DNA-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_02315DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (137 aa)    
Predicted Functional Partners:
CN09_02310
Holliday junction resolvase; Derived by automated computational analysis using gene prediction method- Protein Homology (83 aa)
         
  0.863
ruvA
Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB (204 aa)
              0.847
CN09_28990
AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (77 aa)
 
     
  0.690
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5’-terminal phosphate and a 3’-terminal hydroxyl group (170 aa)
              0.687
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
              0.601
CN09_10435
Cytochrome C biogenesis protein CcmH; Derived by automated computational analysis using gene prediction method- Protein Homology (130 aa)
 
     
  0.560
CN09_14365
AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (80 aa)
 
 
 
  0.554
ruvB
Holliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing (347 aa)
              0.549
CN09_02330
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method- Protein Homology (306 aa)
              0.544
CN09_02335
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the Nudix hydrolase family (169 aa)
              0.543
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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