CN09_02385 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_02385

Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (410 aa)

Predicted Functional Partners:

CN09_15290

0.999

CN09_01825

0.999

CN09_02380

0.967

tolB

0.949

CN09_02375

0.921

CN09_22160

0.916

CN09_02390

0.831

CN09_18560

0.801

CN09_17085

0.793

CN09_06175

0.788

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01825	CN09_02385	CN09_01825	CN09_02385	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_01825	CN09_02390	CN09_01825	CN09_02390	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_01825	CN09_06175	CN09_01825	CN09_06175	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.918
CN09_01825	CN09_15290	CN09_01825	CN09_15290	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.837
CN09_01825	CN09_17085	CN09_01825	CN09_17085	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	0.922
CN09_01825	CN09_18560	CN09_01825	CN09_18560	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.428
CN09_01825	CN09_22160	CN09_01825	CN09_22160	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_02375	CN09_02380	CN09_02375	CN09_02380	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_02375	CN09_02385	CN09_02375	CN09_02385	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.921
CN09_02375	CN09_02390	CN09_02375	CN09_02390	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.787
CN09_02375	CN09_06175	CN09_02375	CN09_06175	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.984
CN09_02375	CN09_15290	CN09_02375	CN09_15290	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_02375	tolB	CN09_02375	CN09_02395	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	Protein TolB; Involved in the TonB-independent uptake of proteins	0.995
CN09_02380	CN09_02375	CN09_02380	CN09_02375	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method- Protein Homology	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_02380	CN09_02385	CN09_02380	CN09_02385	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.967
CN09_02380	CN09_02390	CN09_02380	CN09_02390	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.851
CN09_02380	CN09_06175	CN09_02380	CN09_06175	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.984
CN09_02380	CN09_15290	CN09_02380	CN09_15290	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_02380	tolB	CN09_02380	CN09_02395	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method- Protein Homology	Protein TolB; Involved in the TonB-independent uptake of proteins	0.991
CN09_02385	CN09_01825	CN09_02385	CN09_01825	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999

page 1 of 5

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About