Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CN09_15290 | bamA | CN09_15290 | CN09_07890 | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | 0.603 |
| CN09_15290 | bamD | CN09_15290 | CN09_05090 | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | 0.614 |
| CN09_15290 | pal | CN09_15290 | CN09_02400 | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | Membrane protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity | 0.894 |
| CN09_15290 | tilS | CN09_15290 | CN09_02410 | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | Cell cycle protein mesj; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine | 0.532 |
| CN09_15290 | tolB | CN09_15290 | CN09_02395 | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | Translocation protein tolb; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity | 0.955 |
| CN09_15290 | tolQ | CN09_15290 | CN09_02375 | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | Biopolymer transporter exbb; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity | 0.999 |
| CN09_15290 | tolR | CN09_15290 | CN09_02380 | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.999 |
| CN09_15290 | ybgC | CN09_15290 | CN09_02370 | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | 4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.414 |
| CN09_15290 | ybgF | CN09_15290 | CN09_02405 | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | Tol-pal system protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division | 0.956 |
| bamA | CN09_15290 | CN09_07890 | CN09_15290 | Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.603 |
| bamA | bamD | CN09_07890 | CN09_05090 | Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | 0.999 |
| bamA | nuoI | CN09_07890 | CN09_09975 | Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | Nadh dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient | 0.697 |
| bamA | pal | CN09_07890 | CN09_02400 | Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | Membrane protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity | 0.958 |
| bamA | tilS | CN09_07890 | CN09_02410 | Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | Cell cycle protein mesj; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine | 0.722 |
| bamA | tolB | CN09_07890 | CN09_02395 | Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | Translocation protein tolb; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity | 0.900 |
| bamA | tolQ | CN09_07890 | CN09_02375 | Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | Biopolymer transporter exbb; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity | 0.737 |
| bamA | tolR | CN09_07890 | CN09_02380 | Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.656 |
| bamA | ybgF | CN09_07890 | CN09_02405 | Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | Tol-pal system protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division | 0.439 |
| bamD | CN09_15290 | CN09_05090 | CN09_15290 | Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.614 |
| bamD | bamA | CN09_05090 | CN09_07890 | Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | 0.999 |
page 1 of 5
