CN09_02400 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_02400

Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ompA family (177 aa)

Predicted Functional Partners:

tolB

0.999

CN09_02375

0.981

cpoB

0.979

CN09_02380

0.974

bamA

0.947

CN09_15290

0.876

tilS

0.861

CN09_09920

0.854

CN09_02370

0.849

ftsH

0.825

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_02370	CN09_02375	CN09_02370	CN09_02375	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method- Protein Homology	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	0.979
CN09_02370	CN09_02380	CN09_02370	CN09_02380	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method- Protein Homology	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method- Protein Homology	0.905
CN09_02370	CN09_02400	CN09_02370	CN09_02400	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ompA family	0.849
CN09_02370	CN09_15290	CN09_02370	CN09_15290	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.426
CN09_02370	cpoB	CN09_02370	CN09_02405	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method- Protein Homology	Cell division coordinator CpoB; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division	0.808
CN09_02370	ftsH	CN09_02370	CN09_02415	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method- Protein Homology	ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family	0.746
CN09_02370	tilS	CN09_02370	CN09_02410	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method- Protein Homology	tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine; Belongs to the tRNA(Ile)-lysidine synthase family	0.744
CN09_02370	tolB	CN09_02370	CN09_02395	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method- Protein Homology	Protein TolB; Involved in the TonB-independent uptake of proteins	0.952
CN09_02375	CN09_02370	CN09_02375	CN09_02370	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.979
CN09_02375	CN09_02380	CN09_02375	CN09_02380	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_02375	CN09_02400	CN09_02375	CN09_02400	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ompA family	0.981
CN09_02375	CN09_09920	CN09_02375	CN09_09920	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	Multidrug ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.829
CN09_02375	CN09_15290	CN09_02375	CN09_15290	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_02375	bamA	CN09_02375	CN09_07890	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	0.729
CN09_02375	cpoB	CN09_02375	CN09_02405	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	Cell division coordinator CpoB; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division	0.938
CN09_02375	ftsH	CN09_02375	CN09_02415	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family	0.794
CN09_02375	tilS	CN09_02375	CN09_02410	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine; Belongs to the tRNA(Ile)-lysidine synthase family	0.802
CN09_02375	tolB	CN09_02375	CN09_02395	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	Protein TolB; Involved in the TonB-independent uptake of proteins	0.995
CN09_02380	CN09_02370	CN09_02380	CN09_02370	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method- Protein Homology	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.905
CN09_02380	CN09_02375	CN09_02380	CN09_02375	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method- Protein Homology	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999

page 1 of 5

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About