CN09_02510 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

CN09_02510

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (75 aa)

Predicted Functional Partners:

CN09_06320

0.741

CN09_16135

0.731

CN09_08155

0.728

CN09_12400

0.718

CN09_10005

0.714

CN09_08320

0.706

CN09_10600

0.696

CN09_27530

0.690

CN09_06640

0.690

CN09_34310

0.669

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

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node1	node2	node1 annotation	node2 annotation	score
CN09_02510	CN09_06320	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.741
CN09_02510	CN09_06640	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.690
CN09_02510	CN09_08155	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.728
CN09_02510	CN09_08320	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Sporulation protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.706
CN09_02510	CN09_10005	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.714
CN09_02510	CN09_10600	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.696
CN09_02510	CN09_12400	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.718
CN09_02510	CN09_16135	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.731
CN09_02510	CN09_27530	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.690
CN09_02510	CN09_34310	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.669
CN09_06320	CN09_02510	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.741
CN09_06320	CN09_06640	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.416
CN09_06320	CN09_08155	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.775
CN09_06320	CN09_08320	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Sporulation protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.780
CN09_06320	CN09_10005	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.775
CN09_06320	CN09_10600	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.747
CN09_06320	CN09_12400	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.483
CN09_06320	CN09_16135	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.602
CN09_06320	CN09_27530	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.687
CN09_06320	CN09_34310	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.780