STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tauATaurine ABC transporter substrate-binding protein; With TauB and TauC is responsible for taurine uptake; Derived by automated computational analysis using gene prediction method: Protein Homology (335 aa)    
Predicted Functional Partners:
tauB
Taurine transporter atp-binding subunit; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
 
  
 0.993
CN09_02540
Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.986
tatB
Preprotein translocase; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation
      
 0.855
CN09_30115
Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.733
ssuC
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.727
ssuD
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates
 
 
 0.709
CN09_21215
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.698
CN09_30120
Sulfonate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.683
CN09_22440
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.668
CN09_22340
Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.665
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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