CN09_02595 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_02595

Fuconate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology (425 aa)

Predicted Functional Partners:

CN09_01235

0.942

CN09_23785

0.895

CN09_01295

0.890

CN09_01270

0.874

CN09_01265

0.785

CN09_01280

0.768

CN09_02590

0.767

CN09_20115

0.759

CN09_01255

0.723

CN09_01250

0.712

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_01235	CN09_01250	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.483
CN09_01235	CN09_01255	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	Maltose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.573
CN09_01235	CN09_01265	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	Mandelate racemase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.826
CN09_01235	CN09_01270	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.939
CN09_01235	CN09_01280	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.785
CN09_01235	CN09_01295	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.857
CN09_01235	CN09_02595	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	Fuconate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.942
CN09_01235	CN09_20115	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	Ribose ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RbsD / FucU family	0.778
CN09_01235	CN09_23785	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	Pyridoxal 4-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.765
CN09_01250	CN09_01235	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.483
CN09_01250	CN09_01255	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Maltose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.991
CN09_01250	CN09_01265	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Mandelate racemase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.965
CN09_01250	CN09_01270	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.931
CN09_01250	CN09_01280	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.975
CN09_01250	CN09_01295	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.713
CN09_01250	CN09_02595	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Fuconate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.712
CN09_01255	CN09_01235	Maltose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.573
CN09_01255	CN09_01250	Maltose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.991
CN09_01255	CN09_01265	Maltose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Mandelate racemase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.966
CN09_01255	CN09_01270	Maltose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.905