CN09_02665 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_02665

Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology (188 aa)

Predicted Functional Partners:

CN09_02670

0.861

CN09_07190

0.644

CN09_12955

0.641

CN09_16135

0.639

CN09_34570

0.632

CN09_24095

0.627

CN09_27385

0.608

CN09_07195

0.578

CN09_23925

0.574

CN09_02675

0.573

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 3

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_02665	CN09_02670	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.861
CN09_02665	CN09_02675	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.573
CN09_02665	CN09_07190	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.644
CN09_02665	CN09_07195	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.578
CN09_02665	CN09_12955	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.641
CN09_02665	CN09_16135	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.639
CN09_02665	CN09_23925	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.574
CN09_02665	CN09_24095	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phosphoglycerate mutase family	0.627
CN09_02665	CN09_27385	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.608
CN09_02665	CN09_34570	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Invasion protein B; Derived by automated computational analysis using gene prediction method: Protein Homology	0.632
CN09_02670	CN09_02665	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.861
CN09_02670	CN09_02675	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.540
CN09_02675	CN09_02665	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.573
CN09_02675	CN09_02670	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.540
CN09_07190	CN09_02665	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.644
CN09_07190	CN09_07195	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.979
CN09_07190	CN09_12955	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.644
CN09_07190	CN09_16135	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.695
CN09_07190	CN09_23925	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.500
CN09_07195	CN09_02665	Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.578