Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CN09_02945 | CN09_15290 | CN09_02945 | CN09_15290 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.818 |
| CN09_02945 | coaE | CN09_02945 | CN09_17690 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | Dephospho-coa kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A | 0.823 |
| CN09_02945 | obgE | CN09_02945 | CN09_18000 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | Gtpase cgta; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control | 0.872 |
| CN09_02945 | pgeF | CN09_02945 | CN09_04290 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | Polyphenol oxidase; Belongs to the multicopper oxidase YfiH/RL5 family | 0.874 |
| CN09_02945 | polA | CN09_02945 | CN09_13050 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity | 0.838 |
| CN09_02945 | ribB | CN09_02945 | CN09_16765 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate | 0.916 |
| CN09_02945 | rplR | CN09_02945 | CN09_08815 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance | 0.824 |
| CN09_02945 | rpoH | CN09_02945 | CN09_02940 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | Rna polymerase sigma 70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes | 0.882 |
| CN09_02945 | rsmG | CN09_02945 | CN09_17740 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | 16S rRNA methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA | 0.835 |
| CN09_02945 | truB | CN09_02945 | CN09_34200 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | Trna pseudouridine synthase b; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs | 0.862 |
| CN09_15290 | CN09_02945 | CN09_15290 | CN09_02945 | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | 0.818 |
| CN09_15290 | coaE | CN09_15290 | CN09_17690 | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | Dephospho-coa kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A | 0.634 |
| CN09_15290 | pgeF | CN09_15290 | CN09_04290 | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | Polyphenol oxidase; Belongs to the multicopper oxidase YfiH/RL5 family | 0.979 |
| CN09_15290 | polA | CN09_15290 | CN09_13050 | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity | 0.999 |
| CN09_15290 | ribB | CN09_15290 | CN09_16765 | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate | 0.999 |
| CN09_15290 | rpoH | CN09_15290 | CN09_02940 | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | Rna polymerase sigma 70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes | 0.586 |
| CN09_15290 | rsmG | CN09_15290 | CN09_17740 | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | 16S rRNA methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA | 0.478 |
| CN09_15290 | truB | CN09_15290 | CN09_34200 | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | Trna pseudouridine synthase b; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs | 0.999 |
| coaE | CN09_02945 | CN09_17690 | CN09_02945 | Dephospho-coa kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | 0.823 |
| coaE | CN09_15290 | CN09_17690 | CN09_15290 | Dephospho-coa kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A | Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.634 |
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