STRINGSTRING
CN09_02950 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_02950" - Membrane protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_02950Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (125 aa)    
Predicted Functional Partners:
CN09_02955
RNA methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
 
          0.896
CN09_16275
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (210 aa)
   
          0.776
CN09_28005
Outer membrane lipoprotein omp19; Derived by automated computational analysis using gene prediction method- Protein Homology (177 aa)
   
          0.744
CN09_02945
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil (341 aa)
              0.729
CN09_16625
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (188 aa)
   
          0.729
CN09_27895
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (127 aa)
   
          0.721
CN09_06475
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (183 aa)
   
          0.720
CN09_05155
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (103 aa)
   
          0.717
CN09_06265
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (190 aa)
   
          0.711
CN09_07155
Phospholipase; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)
   
          0.707
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (10%) [HD]