CN09_02950 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_02950

Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (125 aa)

Predicted Functional Partners:

CN09_02955

0.896

CN09_16275

0.776

CN09_28005

0.744

CN09_02945

0.729

CN09_16625

0.729

CN09_27895

0.721

CN09_06475

0.720

CN09_05155

0.717

CN09_06265

0.711

CN09_07155

0.707

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 4

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_02945	CN09_02950	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.729
CN09_02945	CN09_02955	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	RNA methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.788
CN09_02950	CN09_02945	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	0.729
CN09_02950	CN09_02955	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	RNA methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.896
CN09_02950	CN09_05155	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.717
CN09_02950	CN09_06265	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.711
CN09_02950	CN09_06475	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.720
CN09_02950	CN09_07155	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Phospholipase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.707
CN09_02950	CN09_16275	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.776
CN09_02950	CN09_16625	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.729
CN09_02950	CN09_27895	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.721
CN09_02950	CN09_28005	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Outer membrane lipoprotein omp19; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_02955	CN09_02945	RNA methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	0.788
CN09_02955	CN09_02950	RNA methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.896
CN09_05155	CN09_02950	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.717
CN09_05155	CN09_06475	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.782
CN09_05155	CN09_07155	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Phospholipase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.775
CN09_05155	CN09_16275	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.763
CN09_05155	CN09_16625	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.746
CN09_05155	CN09_27895	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.781