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CN09_03240 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_03240" - Membrane protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_03240Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (134 aa)    
Predicted Functional Partners:
CN09_03245
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (117 aa)
 
          0.974
CN09_01735
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (157 aa)
   
          0.774
CN09_03280
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (398 aa)
 
          0.752
CN09_33975
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (68 aa)
   
          0.726
CN09_02580
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (129 aa)
   
          0.694
CN09_03270
Monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (57 aa)
 
          0.692
CN09_07255
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (93 aa)
   
          0.692
CN09_18865
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (202 aa)
   
          0.654
CN09_03275
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (151 aa)
 
          0.653
CN09_17095
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (141 aa)
   
          0.623
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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