CN09_03275 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_03275

Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (151 aa)

Predicted Functional Partners:

CN09_03280

0.980

CN09_03265

0.927

CN09_03270

0.926

hmuV

0.908

CN09_03260

0.892

CN09_03295

0.813

CN09_03245

0.781

CN09_03255

0.674

CN09_33975

0.662

CN09_02380

0.660

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_02380	CN09_03260	CN09_02380	CN09_03260	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology	Hemin ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.695
CN09_02380	CN09_03270	CN09_02380	CN09_03270	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.549
CN09_02380	CN09_03275	CN09_02380	CN09_03275	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.660
CN09_02380	CN09_03280	CN09_02380	CN09_03280	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.988
CN09_02380	hmuV	CN09_02380	CN09_03250	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology	Hemin import ATP-binding protein HmuV; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system	0.650
CN09_03245	CN09_03255	CN09_03245	CN09_03255	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily	0.520
CN09_03245	CN09_03260	CN09_03245	CN09_03260	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hemin ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.512
CN09_03245	CN09_03265	CN09_03245	CN09_03265	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.632
CN09_03245	CN09_03270	CN09_03245	CN09_03270	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.635
CN09_03245	CN09_03275	CN09_03245	CN09_03275	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.781
CN09_03245	CN09_03280	CN09_03245	CN09_03280	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.787
CN09_03245	CN09_33975	CN09_03245	CN09_33975	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.792
CN09_03245	hmuV	CN09_03245	CN09_03250	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hemin import ATP-binding protein HmuV; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system	0.581
CN09_03255	CN09_03245	CN09_03255	CN09_03245	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.520
CN09_03255	CN09_03260	CN09_03255	CN09_03260	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily	Hemin ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.998
CN09_03255	CN09_03265	CN09_03255	CN09_03265	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.943
CN09_03255	CN09_03270	CN09_03255	CN09_03270	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.883
CN09_03255	CN09_03275	CN09_03255	CN09_03275	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.674
CN09_03255	CN09_03280	CN09_03255	CN09_03280	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.649
CN09_03255	CN09_03295	CN09_03255	CN09_03295	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.471

page 1 of 5

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About