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CN09_03300 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_03300" - Membrane protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_03300Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (125 aa)    
Predicted Functional Partners:
CN09_16300
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the monovalent cation-proton antiporter 2 (CPA2) transporter (TC 2.A.37) family (606 aa)
   
        0.999
CN09_03305
Globin; Derived by automated computational analysis using gene prediction method- Protein Homology (129 aa)
 
          0.897
CN09_27510
Cell division protein FtsX; Derived by automated computational analysis using gene prediction method- Protein Homology (348 aa)
 
          0.755
CN09_11915
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (119 aa)
 
          0.748
engB
Probable GTP-binding protein EngB; Necessary for normal cell division and for the maintenance of normal septation (219 aa)
              0.744
CN09_10935
Protein tyrosine phosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (177 aa)
   
          0.743
CN09_27580
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (258 aa)
   
          0.715
CN09_07045
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (201 aa)
   
          0.709
CN09_07090
Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method- Protein Homology (153 aa)
 
          0.707
CN09_08630
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (224 aa)
   
          0.707
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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