STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_03320Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology (297 aa)    
Predicted Functional Partners:
CN09_03315
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.987
CN09_03310
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.792
CN09_23820
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.772
CN09_34380
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.740
CN09_23845
Alpha-galactosidase; Catalyses the hydrolysis of terminal non-reducing alpha-D-galactose residues in alpha-D-galactosides; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.724
CN09_23825
Periplasmic alpha-galactoside-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.688
CN09_29105
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.656
CN09_23810
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.622
CN09_29215
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.603
CN09_03355
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.586
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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