Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CN09_03365 | CN09_08245 | CN09_03365 | CN09_08245 | Ubiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology | Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.972 |
| CN09_03365 | rplD | CN09_03365 | CN09_08890 | Ubiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel | 0.967 |
| CN09_03365 | rpsC | CN09_03365 | CN09_08865 | Ubiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation | 0.968 |
| CN09_03365 | rpsD | CN09_03365 | CN09_06590 | Ubiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit | 0.967 |
| CN09_03365 | rpsE | CN09_03365 | CN09_08810 | Ubiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology | Small subunit ribosomal protein s5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body | 0.972 |
| CN09_03365 | rpsG | CN09_03365 | CN09_08915 | Ubiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA | 0.968 |
| CN09_03365 | rpsL | CN09_03365 | CN09_08920 | Ubiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology | Small subunit ribosomal protein s12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit | 0.968 |
| CN09_03365 | rpsO | CN09_03365 | CN09_34210 | Ubiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome | 0.972 |
| CN09_03365 | rpsQ | CN09_03365 | CN09_08850 | Ubiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology | Small subunit ribosomal protein s17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA | 0.966 |
| CN09_03365 | rpsS | CN09_03365 | CN09_08875 | Ubiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA | 0.968 |
| CN09_08245 | CN09_03365 | CN09_08245 | CN09_03365 | Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology | Ubiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.972 |
| rplD | CN09_03365 | CN09_08890 | CN09_03365 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel | Ubiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.967 |
| rplD | rpsC | CN09_08890 | CN09_08865 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation | 0.999 |
| rplD | rpsD | CN09_08890 | CN09_06590 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit | 0.999 |
| rplD | rpsE | CN09_08890 | CN09_08810 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel | Small subunit ribosomal protein s5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body | 0.999 |
| rplD | rpsG | CN09_08890 | CN09_08915 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA | 0.999 |
| rplD | rpsL | CN09_08890 | CN09_08920 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel | Small subunit ribosomal protein s12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit | 0.999 |
| rplD | rpsO | CN09_08890 | CN09_34210 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome | 0.999 |
| rplD | rpsQ | CN09_08890 | CN09_08850 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel | Small subunit ribosomal protein s17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA | 0.999 |
| rplD | rpsS | CN09_08890 | CN09_08875 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA | 0.999 |
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