STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_03365Ubiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology (274 aa)    
Predicted Functional Partners:
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
 0.569
CN09_03360
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.535
CN09_03355
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.529
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
 
  
 0.528
CN09_03370
Voltage-gated chloride channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.484
CN09_04270
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.458
CN09_03435
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.456
CN09_11755
Electron transfer flavoprotein-ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 
 0.412
CN09_08655
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.404
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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