CN09_03440 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_03440

Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (340 aa)

Predicted Functional Partners:

CN09_03435

0.845

CN09_03430

0.734

CN09_03445

0.706

CN09_24870

0.520

CN09_11580

0.509

CN09_03425

0.484

CN09_13940

0.468

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

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node1	node2	node1 annotation	node2 annotation	score
CN09_03425	CN09_03430	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.517
CN09_03425	CN09_03435	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.573
CN09_03425	CN09_03440	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.484
CN09_03430	CN09_03425	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.517
CN09_03430	CN09_03435	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.954
CN09_03430	CN09_03440	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.734
CN09_03430	CN09_03445	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.600
CN09_03435	CN09_03425	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.573
CN09_03435	CN09_03430	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.954
CN09_03435	CN09_03440	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.845
CN09_03435	CN09_03445	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.615
CN09_03440	CN09_03425	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.484
CN09_03440	CN09_03430	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.734
CN09_03440	CN09_03435	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.845
CN09_03440	CN09_03445	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.706
CN09_03440	CN09_11580	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	5-dehydro-2-deoxygluconokinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.509
CN09_03440	CN09_13940	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.468
CN09_03440	CN09_24870	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Preprotein translocase subunit YidC; Derived by automated computational analysis using gene prediction method- Protein Homology	0.520
CN09_03445	CN09_03430	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.600
CN09_03445	CN09_03435	Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.615