CN09_03555 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_03555

Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (153 aa)

Predicted Functional Partners:

CN09_15515

0.779

CN09_15085

0.776

CN09_27500

0.775

CN09_04595

0.770

CN09_27280

0.770

CN09_14760

0.769

CN09_04590

0.765

CN09_08500

0.765

CN09_01340

0.758

CN09_08240

0.751

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 6

Network

Neighborhood

Experiments

Cooccurrence

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_01340	CN09_03555	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.758
CN09_01340	CN09_04590	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.631
CN09_01340	CN09_04595	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.752
CN09_01340	CN09_08240	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.782
CN09_01340	CN09_08500	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology	0.773
CN09_01340	CN09_14760	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.766
CN09_01340	CN09_15085	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.762
CN09_01340	CN09_15515	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Flagellar protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.673
CN09_01340	CN09_27280	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.662
CN09_01340	CN09_27500	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.782
CN09_03555	CN09_01340	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.758
CN09_03555	CN09_04590	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.765
CN09_03555	CN09_04595	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.770
CN09_03555	CN09_08240	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.751
CN09_03555	CN09_08500	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology	0.765
CN09_03555	CN09_14760	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.769
CN09_03555	CN09_15085	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.776
CN09_03555	CN09_15515	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Flagellar protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.779
CN09_03555	CN09_27280	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.770
CN09_03555	CN09_27500	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.775