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CN09_03560 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_03560" - LysR family transcriptional regulator in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
CN09_03560LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)    
Predicted Functional Partners:
CN09_03580
GguC protein; Derived by automated computational analysis using gene prediction method- Protein Homology (332 aa)
 
          0.773
CN09_03555
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (153 aa)
 
          0.724
CN09_29310
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer (341 aa)
              0.652
CN09_03565
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (354 aa)
         
  0.640
CN09_10635
Galactose 1-dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (307 aa)
 
          0.624
CN09_06720
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (170 aa)
   
          0.551
CN09_16380
2-dehydro-3-deoxygalactonokinase; Derived by automated computational analysis using gene prediction method- Protein Homology (310 aa)
 
          0.544
CN09_07600
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (320 aa)
              0.541
CN09_33100
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (306 aa)
 
          0.532
CN09_03595
Dihydroxy-acid dehydratase; Catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the IlvD/Edd family (581 aa)
 
     
  0.491
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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