STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_03675OHCU decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology (167 aa)    
Predicted Functional Partners:
CN09_03690
5-hydroxyisourate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily
   
 0.999
CN09_03670
Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.997
CN09_18390
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.989
allA
Ureidoglycolate lyase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
 
    0.936
CN09_03710
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.932
CN09_03740
FAD-binding molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
     0.902
CN09_03730
XdhC protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.884
CN09_03705
Guanine deaminase; Catalyzes the deamination of guanine; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.785
CN09_03735
Aldehyde oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.774
CN09_03695
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.753
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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