CN09_03835 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_03835

Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (160 aa)

Predicted Functional Partners:

CN09_30500

0.726

CN09_16910

0.707

CN09_22215

0.701

CN09_30615

0.690

CN09_22140

0.688

CN09_30620

0.682

CN09_05765

0.676

CN09_25910

0.658

CN09_30495

0.658

CN09_20395

0.657

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

page 1 of 6

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2022

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_03835	CN09_05765	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.676
CN09_03835	CN09_16910	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.707
CN09_03835	CN09_20395	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Urease-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.657
CN09_03835	CN09_22140	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Belongs to the peptidase S14 family	0.688
CN09_03835	CN09_22215	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Pilus assembly protein PilN; Derived by automated computational analysis using gene prediction method: Protein Homology	0.701
CN09_03835	CN09_25910	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology	0.658
CN09_03835	CN09_30495	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.658
CN09_03835	CN09_30500	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.726
CN09_03835	CN09_30615	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.690
CN09_03835	CN09_30620	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.682
CN09_05765	CN09_03835	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.676
CN09_05765	CN09_16910	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.783
CN09_05765	CN09_20395	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Urease-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.737
CN09_05765	CN09_22140	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Belongs to the peptidase S14 family	0.774
CN09_05765	CN09_22215	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Pilus assembly protein PilN; Derived by automated computational analysis using gene prediction method: Protein Homology	0.736
CN09_05765	CN09_25910	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology	0.775
CN09_05765	CN09_30495	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.804
CN09_05765	CN09_30500	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.849
CN09_05765	CN09_30615	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.771
CN09_05765	CN09_30620	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.766