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oppD protein (Agrobacterium rhizogenes) - STRING interaction network
"oppD" - Oligopeptide transporter ATP-binding component in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppDOligopeptide transporter ATP-binding component; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (331 aa)    
Predicted Functional Partners:
CN09_03865
Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
 
  0.970
oppB
Oligopeptide transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (307 aa)
 
  0.965
CN09_03855
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (328 aa)
 
 
0.910
CN09_03875
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (526 aa)
 
  0.897
CN09_22900
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
 
  0.735
CN09_26435
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
  0.722
CN09_26890
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
 
  0.687
CN09_26440
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
 
  0.687
CN09_22905
Peptide permease BMEII0860; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
 
  0.680
CN09_33460
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (291 aa)
 
  0.661
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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