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CN09_03910 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_03910" - ABC transporter permease in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
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[Homology]
Score
CN09_03910ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (281 aa)    
Predicted Functional Partners:
CN09_03905
Hemolysin; Derived by automated computational analysis using gene prediction method- Protein Homology (349 aa)
 
  0.999
CN09_03915
Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (318 aa)
   
  0.996
CN09_21105
Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (283 aa)
   
  0.956
CN09_26055
Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (355 aa)
 
  0.910
CN09_05775
Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (350 aa)
 
  0.910
CN09_21100
Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (363 aa)
 
  0.909
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
              0.796
CN09_26045
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
   
  0.782
betI
HTH-type transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes (196 aa)
         
  0.761
CN09_05785
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (332 aa)
   
  0.719
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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