CN09_03970 protein (Agrobacterium rhizogenes)

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Predicted Interactions

gene neighborhood

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textmining

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protein homology

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Score

CN09_03970

Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)

Predicted Functional Partners:

CN09_04865

0.793

hisC

0.744

CN09_27545

0.744

CN09_28220

0.537

CN09_09990

0.502

CN09_10270

0.469

CN09_23670

0.465

CN09_07500

0.449

rpsD

0.441

CN09_03975

0.422

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_03970	CN09_03975	CN09_03970	CN09_03975	Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology	Cation transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.422
CN09_03970	CN09_04865	CN09_03970	CN09_04865	Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.793
CN09_03970	CN09_07500	CN09_03970	CN09_07500	Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.449
CN09_03970	CN09_09990	CN09_03970	CN09_09990	Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology	NADH-ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.502
CN09_03970	CN09_10270	CN09_03970	CN09_10270	Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.469
CN09_03970	CN09_23670	CN09_03970	CN09_23670	Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.465
CN09_03970	CN09_27545	CN09_03970	CN09_27545	Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_03970	CN09_28220	CN09_03970	CN09_28220	Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.537
CN09_03970	hisC	CN09_03970	CN09_27550	Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology	Histidinol-phosphate aminotransferase; Catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily	0.744
CN09_03970	rpsD	CN09_03970	CN09_06590	Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit	0.441
CN09_03975	CN09_03970	CN09_03975	CN09_03970	Cation transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.422
CN09_04865	CN09_03970	CN09_04865	CN09_03970	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.793
CN09_07500	CN09_03970	CN09_07500	CN09_03970	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.449
CN09_07500	CN09_28220	CN09_07500	CN09_28220	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.827
CN09_09990	CN09_03970	CN09_09990	CN09_03970	NADH-ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.502
CN09_09990	CN09_10270	CN09_09990	CN09_10270	NADH-ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.473
CN09_09990	CN09_28220	CN09_09990	CN09_28220	NADH-ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.490
CN09_10270	CN09_03970	CN09_10270	CN09_03970	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.469
CN09_10270	CN09_09990	CN09_10270	CN09_09990	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	NADH-ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.473
CN09_23670	CN09_03970	CN09_23670	CN09_03970	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.465

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