STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_03970Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology (259 aa)    
Predicted Functional Partners:
CN09_04865
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.793
CN09_27545
Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.744
hisC
Histidinol-phosphate aminotransferase; Catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
       0.744
CN09_28220
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.537
CN09_09990
NADH-ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.502
CN09_10270
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.469
CN09_23670
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.465
CN09_07500
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.449
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
       0.441
CN09_03975
Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.422
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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