CN09_04050 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

CN09_04050

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (65 aa)

Predicted Functional Partners:

CN09_07290

0.768

CN09_19945

0.759

CN09_09025

0.735

CN09_05180

0.689

CN09_11930

0.660

CN09_04435

0.646

CN09_08645

0.636

CN09_08650

0.632

CN09_08655

0.626

CN09_04055

0.617

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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node1	node2	node1 annotation	node2 annotation	score
CN09_04050	CN09_04055	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transmembrane transcriptional regulator (Anti-sigma factor); Derived by automated computational analysis using gene prediction method- Protein Homology	0.617
CN09_04050	CN09_04435	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.646
CN09_04050	CN09_05180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.689
CN09_04050	CN09_07290	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	NADH-ubiquinone oxidoreductase subunit E; Derived by automated computational analysis using gene prediction method- Protein Homology	0.768
CN09_04050	CN09_08645	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.636
CN09_04050	CN09_08650	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.632
CN09_04050	CN09_08655	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.626
CN09_04050	CN09_09025	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Metalloprotease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.735
CN09_04050	CN09_11930	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.660
CN09_04050	CN09_19945	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.759
CN09_04055	CN09_04050	Transmembrane transcriptional regulator (Anti-sigma factor); Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.617
CN09_04435	CN09_04050	Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.646
CN09_04435	CN09_05180	Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.774
CN09_04435	CN09_07290	Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	NADH-ubiquinone oxidoreductase subunit E; Derived by automated computational analysis using gene prediction method- Protein Homology	0.559
CN09_04435	CN09_08645	Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.738
CN09_04435	CN09_08650	Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.729
CN09_04435	CN09_08655	Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.734
CN09_04435	CN09_09025	Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Metalloprotease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.716
CN09_04435	CN09_19945	Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.497
CN09_05180	CN09_04050	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.689