CN09_04120 protein (Agrobacterium rhizogenes)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

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protein homology

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[Homology]

Score

CN09_04120

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (207 aa)

Predicted Functional Partners:

CN09_04130

0.954

CN09_04125

0.954

CN09_04115

0.874

polA

0.867

CN09_04110

0.860

CN09_04105

0.860

CN09_04100

0.860

CN09_11755

0.815

CN09_04085

0.744

CN09_23475

0.725

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_04085	CN09_04120	CN09_04085	CN09_04120	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_04085	CN09_04125	CN09_04085	CN09_04125	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	0.773
CN09_04085	CN09_04130	CN09_04085	CN09_04130	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Poly(A) polymerase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_04085	polA	CN09_04085	CN09_13050	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity	0.704
CN09_04100	CN09_04105	CN09_04100	CN09_04105	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	RNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.989
CN09_04100	CN09_04110	CN09_04100	CN09_04110	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.997
CN09_04100	CN09_04115	CN09_04100	CN09_04115	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.992
CN09_04100	CN09_04120	CN09_04100	CN09_04120	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.860
CN09_04100	CN09_04125	CN09_04100	CN09_04125	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	0.860
CN09_04100	CN09_04130	CN09_04100	CN09_04130	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Poly(A) polymerase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.860
CN09_04105	CN09_04100	CN09_04105	CN09_04100	RNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.989
CN09_04105	CN09_04110	CN09_04105	CN09_04110	RNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.988
CN09_04105	CN09_04115	CN09_04105	CN09_04115	RNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.955
CN09_04105	CN09_04120	CN09_04105	CN09_04120	RNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.860
CN09_04105	CN09_04125	CN09_04105	CN09_04125	RNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	0.860
CN09_04105	CN09_04130	CN09_04105	CN09_04130	RNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Poly(A) polymerase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.860
CN09_04110	CN09_04100	CN09_04110	CN09_04100	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.997
CN09_04110	CN09_04105	CN09_04110	CN09_04105	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	RNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.988
CN09_04110	CN09_04115	CN09_04110	CN09_04115	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.997
CN09_04110	CN09_04120	CN09_04110	CN09_04120	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.860

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