CN09_04130 protein (Agrobacterium rhizogenes)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

CN09_04130

Poly(A) polymerase; Derived by automated computational analysis using gene prediction method- Protein Homology (418 aa)

Predicted Functional Partners:

nnrD

0.999

CN09_15290

0.999

polA

0.998

CN09_04125

0.957

CN09_04120

0.954

CN09_17560

0.916

gcvP

0.879

CN09_04110

0.877

CN09_04115

0.874

pheT

0.866

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_04110	CN09_04115	CN09_04110	CN09_04115	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.997
CN09_04110	CN09_04120	CN09_04110	CN09_04120	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.860
CN09_04110	CN09_04125	CN09_04110	CN09_04125	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	0.860
CN09_04110	CN09_04130	CN09_04110	CN09_04130	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Poly(A) polymerase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.877
CN09_04110	CN09_15290	CN09_04110	CN09_15290	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.408
CN09_04110	gcvP	CN09_04110	CN09_06885	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family	0.841
CN09_04115	CN09_04110	CN09_04115	CN09_04110	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.997
CN09_04115	CN09_04120	CN09_04115	CN09_04120	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.874
CN09_04115	CN09_04125	CN09_04115	CN09_04125	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	0.876
CN09_04115	CN09_04130	CN09_04115	CN09_04130	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	Poly(A) polymerase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.874
CN09_04115	CN09_15290	CN09_04115	CN09_15290	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.733
CN09_04120	CN09_04110	CN09_04120	CN09_04110	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.860
CN09_04120	CN09_04115	CN09_04120	CN09_04115	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.874
CN09_04120	CN09_04125	CN09_04120	CN09_04125	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	0.954
CN09_04120	CN09_04130	CN09_04120	CN09_04130	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Poly(A) polymerase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.954
CN09_04120	polA	CN09_04120	CN09_13050	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity	0.867
CN09_04125	CN09_04110	CN09_04125	CN09_04110	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.860
CN09_04125	CN09_04115	CN09_04125	CN09_04115	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.876
CN09_04125	CN09_04120	CN09_04125	CN09_04120	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.954
CN09_04125	CN09_04130	CN09_04125	CN09_04130	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	Poly(A) polymerase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.957

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