CN09_04140 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_04140

Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (92 aa)

Predicted Functional Partners:

CN09_27500

0.743

CN09_06920

0.742

CN09_03680

0.719

CN09_10600

0.700

CN09_08500

0.687

CN09_14760

0.682

CN09_10245

0.673

CN09_09725

0.646

CN09_16215

0.644

CN09_03715

0.633

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

page 1 of 5

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Fusion

Databases

Coexpression

© STRING Consortium 2022

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_03680	CN09_03715	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.461
CN09_03680	CN09_04140	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.719
CN09_03680	CN09_06920	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.632
CN09_03680	CN09_08500	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology	0.635
CN09_03680	CN09_09725	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.425
CN09_03680	CN09_10245	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.450
CN09_03680	CN09_10600	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.515
CN09_03680	CN09_14760	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.535
CN09_03680	CN09_27500	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.558
CN09_03715	CN09_03680	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.461
CN09_03715	CN09_04140	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.633
CN09_03715	CN09_06920	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.520
CN09_03715	CN09_08500	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology	0.701
CN09_03715	CN09_10245	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.581
CN09_03715	CN09_10600	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.664
CN09_03715	CN09_14760	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.594
CN09_03715	CN09_27500	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.700
CN09_04140	CN09_03680	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.719
CN09_04140	CN09_03715	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.633
CN09_04140	CN09_06920	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.742