CN09_04230 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_04230

Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology (144 aa)

Predicted Functional Partners:

pth

0.891

CN09_04245

0.687

CN09_04240

0.641

CN09_07470

0.448

ctc

0.426

CN09_13120

0.423

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_04230	CN09_04240	CN09_04230	CN09_04240	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.641
CN09_04230	CN09_04245	CN09_04230	CN09_04245	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.687
CN09_04230	CN09_07470	CN09_04230	CN09_07470	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	0.448
CN09_04230	CN09_13120	CN09_04230	CN09_13120	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Protein phnH; Derived by automated computational analysis using gene prediction method: Protein Homology	0.423
CN09_04230	ctc	CN09_04230	CN09_04250	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance	0.426
CN09_04230	pth	CN09_04230	CN09_04235	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis; Belongs to the PTH family	0.891
CN09_04240	CN09_04230	CN09_04240	CN09_04230	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.641
CN09_04240	CN09_04245	CN09_04240	CN09_04245	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.876
CN09_04240	ctc	CN09_04240	CN09_04250	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance	0.456
CN09_04240	pth	CN09_04240	CN09_04235	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis; Belongs to the PTH family	0.659
CN09_04245	CN09_04230	CN09_04245	CN09_04230	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.687
CN09_04245	CN09_04240	CN09_04245	CN09_04240	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.876
CN09_04245	ctc	CN09_04245	CN09_04250	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance	0.473
CN09_04245	pth	CN09_04245	CN09_04235	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis; Belongs to the PTH family	0.656
CN09_07470	CN09_04230	CN09_07470	CN09_04230	Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.448
CN09_07470	ctc	CN09_07470	CN09_04250	Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance	0.765
CN09_07470	pth	CN09_07470	CN09_04235	Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis; Belongs to the PTH family	0.652
CN09_13120	CN09_04230	CN09_13120	CN09_04230	Protein phnH; Derived by automated computational analysis using gene prediction method: Protein Homology	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.423
ctc	CN09_04230	CN09_04250	CN09_04230	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.426
ctc	CN09_04240	CN09_04250	CN09_04240	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.456

page 1 of 2

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About