CN09_04285 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_04285

Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology (383 aa)

Predicted Functional Partners:

CN09_06305

0.964

pgeF

0.956

lipA

0.955

CN09_12295

0.954

CN09_19585

0.954

CN09_21395

0.954

CN09_27255

0.954

CN09_32410

0.954

CN09_33730

0.954

CN09_22470

0.952

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_04285	CN09_06305	CN09_04285	CN09_06305	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology	Nad synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	0.964
CN09_04285	CN09_12295	CN09_04285	CN09_12295	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.954
CN09_04285	CN09_19585	CN09_04285	CN09_19585	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TraB; Derived by automated computational analysis using gene prediction method: Protein Homology	0.954
CN09_04285	CN09_21395	CN09_04285	CN09_21395	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology	Aliphatic nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.954
CN09_04285	CN09_22470	CN09_04285	CN09_22470	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.952
CN09_04285	CN09_27255	CN09_04285	CN09_27255	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology	Nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.954
CN09_04285	CN09_32410	CN09_04285	CN09_32410	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.954
CN09_04285	CN09_33730	CN09_04285	CN09_33730	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology	Conjugal transfer protein TraB; Derived by automated computational analysis using gene prediction method: Protein Homology	0.954
CN09_04285	lipA	CN09_04285	CN09_07790	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology	Radical sam protein; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives	0.955
CN09_04285	pgeF	CN09_04285	CN09_04290	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology	Polyphenol oxidase; Belongs to the multicopper oxidase YfiH/RL5 family	0.956
CN09_06305	CN09_04285	CN09_06305	CN09_04285	Nad synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.964
CN09_06305	CN09_22470	CN09_06305	CN09_22470	Nad synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.973
CN09_06305	lipA	CN09_06305	CN09_07790	Nad synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	Radical sam protein; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives	0.956
CN09_06305	pgeF	CN09_06305	CN09_04290	Nad synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	Polyphenol oxidase; Belongs to the multicopper oxidase YfiH/RL5 family	0.810
CN09_12295	CN09_04285	CN09_12295	CN09_04285	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.954
CN09_12295	CN09_22470	CN09_12295	CN09_22470	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.958
CN09_12295	lipA	CN09_12295	CN09_07790	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Radical sam protein; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives	0.953
CN09_19585	CN09_04285	CN09_19585	CN09_04285	Conjugal transfer protein TraB; Derived by automated computational analysis using gene prediction method: Protein Homology	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.954
CN09_19585	CN09_22470	CN09_19585	CN09_22470	Conjugal transfer protein TraB; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.958
CN09_19585	lipA	CN09_19585	CN09_07790	Conjugal transfer protein TraB; Derived by automated computational analysis using gene prediction method: Protein Homology	Radical sam protein; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives	0.953

page 1 of 3

Server load: low (6%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2022

Credits

Access

Info

About